PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00244A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 243aa    MW: 26385.2 Da    PI: 9.1707
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00244AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.98.2e-34132188158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQy++Il+RRq Rakle+e+kl  k+rkpylheSRh+hA++R+Rg+gGrF
  Oropetium_20150105_00244A 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKCRKPYLHESRHQHAMKRARGTGGRF 188
                                69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-38130191IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.565131191IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-29133188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-25134156IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860136156IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-25165188IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MHENGTIMIQ FGHQMPDYDS SATQSTSGSQ QEVSGMSEGS LNEHNDRSGN LDGYTKSDEN  60
KMMSALSLGN PETAYAHQKS DRNQSFAISY PYADSFYGGA VATYGSHAIM HPQMMGMVPS  120
SRVPLPIEPA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKCRKPYLH ESRHQHAMKR  180
ARGTGGRFLN TKQQAEATAG GGGGGSSDAQ RVTANGGLFT KHEHSLPQPG DLRYHHARGG  240
GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-23132194264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985518.11e-145PREDICTED: nuclear transcription factor Y subunit A-7 isoform X4
RefseqXP_004985516.11e-145PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ9LVJ74e-47NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLK4AEK61e-145K4AEK6_SETIT; Uncharacterized protein
TrEMBLK4AEG21e-145K4AEG2_SETIT; Uncharacterized protein
STRINGSi037269m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-38nuclear factor Y, subunit A6